Speciation of two desert poplar species triggered by Pleistocene climatic oscillations.
Identifieur interne : 002045 ( Main/Exploration ); précédent : 002044; suivant : 002046Speciation of two desert poplar species triggered by Pleistocene climatic oscillations.
Auteurs : J. Wang [République populaire de Chine] ; T. K Llman [Suède] ; J. Liu [République populaire de Chine] ; Q. Guo [République populaire de Chine] ; Y. Wu [République populaire de Chine] ; K. Lin [République populaire de Chine] ; M. Lascoux [République populaire de Chine]Source :
- Heredity [ 1365-2540 ] ; 2014.
Descripteurs français
- KwdFr :
- ADN des chloroplastes (génétique), Chine (MeSH), Climat (MeSH), Données de séquences moléculaires (MeSH), Déséquilibre de liaison (MeSH), Flux des gènes (MeSH), Génétique des populations (MeSH), Géographie (MeSH), Haplotypes (MeSH), Locus génétiques (MeSH), Populus (génétique), Recombinaison génétique (MeSH), Variation génétique (MeSH), Évolution biologique (MeSH).
- MESH :
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Biological Evolution (MeSH), China (MeSH), Climate (MeSH), DNA, Chloroplast (genetics), Gene Flow (MeSH), Genetic Loci (MeSH), Genetic Variation (MeSH), Genetics, Population (MeSH), Geography (MeSH), Haplotypes (MeSH), Linkage Disequilibrium (MeSH), Molecular Sequence Data (MeSH), Populus (genetics), Recombination, Genetic (MeSH).
- MESH :
- chemical , genetics : DNA, Chloroplast.
- geographic : China.
- genetics : Populus.
- Biological Evolution, Climate, Gene Flow, Genetic Loci, Genetic Variation, Genetics, Population, Geography, Haplotypes, Linkage Disequilibrium, Molecular Sequence Data, Recombination, Genetic.
Abstract
Despite the evidence that the Pleistocene climatic fluctuations have seriously affected the distribution of intraspecific diversity, less is known on its impact on interspecific divergence. In this study, we aimed to test the hypothesis that the divergence of two desert poplar species Populus euphratica Oliv. and P. pruinosa Schrenk. occurred during the Pleistocene. We sequenced 11 nuclear loci in 60 individuals from the two species to estimate the divergence time between them and to test whether gene flow occurred after species separation. Divergence time between the two species was estimated to be 0.66-1.37 million years ago (Ma), a time at which glaciation was at its maximum in China and deserts developed widely in central Asia. Isolation-with-Migration model also indicated that the two species had diverged in the presence of gene flow. We also detected evidence of selection at GO in P. euphratica and to a lesser extent at PhyB2. Together, these results underscore the importance of Pleistocene climate oscillations in triggering plant speciation as a result of habitats divergence.
DOI: 10.1038/hdy.2013.87
PubMed: 24065180
PubMed Central: PMC3907101
Affiliations:
- République populaire de Chine, Suède
- East Middle Sweden, Svealand
- Pékin, Uppsala
- Université d'Uppsala
Links toward previous steps (curation, corpus...)
Le document en format XML
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Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou</wicri:regionArea><wicri:noRegion>Lanzhou</wicri:noRegion></affiliation></author><author><name sortKey="K Llman, T" sort="K Llman, T" uniqKey="K Llman T" first="T" last="K Llman">T. K Llman</name><affiliation wicri:level="4"><nlm:affiliation>Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala</wicri:regionArea><orgName type="university">Université d'Uppsala</orgName><placeName><settlement type="city">Uppsala</settlement><region nuts="1">Svealand</region><region nuts="1">East Middle Sweden</region></placeName></affiliation></author><author><name sortKey="Liu, J" sort="Liu, J" uniqKey="Liu J" first="J" last="Liu">J. Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou</wicri:regionArea><wicri:noRegion>Lanzhou</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Q" sort="Guo, Q" uniqKey="Guo Q" first="Q" last="Guo">Q. Guo</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou</wicri:regionArea><wicri:noRegion>Lanzhou</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Y" sort="Wu, Y" uniqKey="Wu Y" first="Y" last="Wu">Y. Wu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou</wicri:regionArea><wicri:noRegion>Lanzhou</wicri:noRegion></affiliation></author><author><name sortKey="Lin, K" sort="Lin, K" uniqKey="Lin K" first="K" last="Lin">K. Lin</name><affiliation wicri:level="3"><nlm:affiliation>1] Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China [2] Graduate School of the Chinese Academy of Sciences, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1] Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China [2] Graduate School of the Chinese Academy of Sciences, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Lascoux, M" sort="Lascoux, M" uniqKey="Lascoux M" first="M" last="Lascoux">M. Lascoux</name><affiliation wicri:level="4"><nlm:affiliation>1] Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden [2] Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1] Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden [2] Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai</wicri:regionArea><orgName type="university">Université d'Uppsala</orgName><placeName><settlement type="city">Uppsala</settlement><region nuts="1">Svealand</region><region nuts="1">East Middle Sweden</region></placeName></affiliation></author></analytic><series><title level="j">Heredity</title><idno type="eISSN">1365-2540</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biological Evolution (MeSH)</term><term>China (MeSH)</term><term>Climate (MeSH)</term><term>DNA, Chloroplast (genetics)</term><term>Gene Flow (MeSH)</term><term>Genetic Loci (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genetics, Population (MeSH)</term><term>Geography (MeSH)</term><term>Haplotypes (MeSH)</term><term>Linkage Disequilibrium (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Populus (genetics)</term><term>Recombination, Genetic (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des chloroplastes (génétique)</term><term>Chine (MeSH)</term><term>Climat (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Déséquilibre de liaison (MeSH)</term><term>Flux des gènes (MeSH)</term><term>Génétique des populations (MeSH)</term><term>Géographie (MeSH)</term><term>Haplotypes (MeSH)</term><term>Locus génétiques (MeSH)</term><term>Populus (génétique)</term><term>Recombinaison génétique (MeSH)</term><term>Variation génétique (MeSH)</term><term>Évolution biologique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Chloroplast</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des chloroplastes</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biological Evolution</term><term>Climate</term><term>Gene Flow</term><term>Genetic Loci</term><term>Genetic Variation</term><term>Genetics, Population</term><term>Geography</term><term>Haplotypes</term><term>Linkage Disequilibrium</term><term>Molecular Sequence Data</term><term>Recombination, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Chine</term><term>Climat</term><term>Données de séquences moléculaires</term><term>Déséquilibre de liaison</term><term>Flux des gènes</term><term>Génétique des populations</term><term>Géographie</term><term>Haplotypes</term><term>Locus génétiques</term><term>Recombinaison génétique</term><term>Variation génétique</term><term>Évolution biologique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Despite the evidence that the Pleistocene climatic fluctuations have seriously affected the distribution of intraspecific diversity, less is known on its impact on interspecific divergence. In this study, we aimed to test the hypothesis that the divergence of two desert poplar species Populus euphratica Oliv. and P. pruinosa Schrenk. occurred during the Pleistocene. We sequenced 11 nuclear loci in 60 individuals from the two species to estimate the divergence time between them and to test whether gene flow occurred after species separation. Divergence time between the two species was estimated to be 0.66-1.37 million years ago (Ma), a time at which glaciation was at its maximum in China and deserts developed widely in central Asia. Isolation-with-Migration model also indicated that the two species had diverged in the presence of gene flow. We also detected evidence of selection at GO in P. euphratica and to a lesser extent at PhyB2. Together, these results underscore the importance of Pleistocene climate oscillations in triggering plant speciation as a result of habitats divergence.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24065180</PMID><DateCompleted><Year>2014</Year><Month>09</Month><Day>11</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-2540</ISSN><JournalIssue CitedMedium="Internet"><Volume>112</Volume><Issue>2</Issue><PubDate><Year>2014</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Heredity</Title><ISOAbbreviation>Heredity (Edinb)</ISOAbbreviation></Journal><ArticleTitle>Speciation of two desert poplar species triggered by Pleistocene climatic oscillations.</ArticleTitle><Pagination><MedlinePgn>156-64</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/hdy.2013.87</ELocationID><Abstract><AbstractText>Despite the evidence that the Pleistocene climatic fluctuations have seriously affected the distribution of intraspecific diversity, less is known on its impact on interspecific divergence. In this study, we aimed to test the hypothesis that the divergence of two desert poplar species Populus euphratica Oliv. and P. pruinosa Schrenk. occurred during the Pleistocene. We sequenced 11 nuclear loci in 60 individuals from the two species to estimate the divergence time between them and to test whether gene flow occurred after species separation. Divergence time between the two species was estimated to be 0.66-1.37 million years ago (Ma), a time at which glaciation was at its maximum in China and deserts developed widely in central Asia. Isolation-with-Migration model also indicated that the two species had diverged in the presence of gene flow. We also detected evidence of selection at GO in P. euphratica and to a lesser extent at PhyB2. Together, these results underscore the importance of Pleistocene climate oscillations in triggering plant speciation as a result of habitats divergence.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Källman</LastName><ForeName>T</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Q</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Y</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>K</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>1] Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China [2] Graduate School of the Chinese Academy of Sciences, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lascoux</LastName><ForeName>M</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>1] Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden [2] Laboratory of Evolutionary Genomics, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList 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Wang</name></noRegion><name sortKey="Guo, Q" sort="Guo, Q" uniqKey="Guo Q" first="Q" last="Guo">Q. Guo</name><name sortKey="Lascoux, M" sort="Lascoux, M" uniqKey="Lascoux M" first="M" last="Lascoux">M. Lascoux</name><name sortKey="Lin, K" sort="Lin, K" uniqKey="Lin K" first="K" last="Lin">K. Lin</name><name sortKey="Liu, J" sort="Liu, J" uniqKey="Liu J" first="J" last="Liu">J. Liu</name><name sortKey="Wu, Y" sort="Wu, Y" uniqKey="Wu Y" first="Y" last="Wu">Y. Wu</name></country><country name="Suède"><region name="Svealand"><name sortKey="K Llman, T" sort="K Llman, T" uniqKey="K Llman T" first="T" last="K Llman">T. K Llman</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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